Source of the materials: Biopython cookbook (adapted) Status: Draft

Biopython

Tutorial and Cookbook

1 - Introduction

2 - Quick Start

3 - Sequence Objects

4 - Sequence Annotation objects

5 - Sequence Input and Output

6 - Multiple Sequence Alignment objects

7 - Blast

8 - BLAST and other sequence search tools (experimental code)

9 - Accessing NCBI’s Entrez databases

10 - Swiss-Prot and ExPASy

11 Going 3D - The PDB module

12 - Bio.PopGen - Population Genetics

13 - Phylogenetics with Bio.Phylo

14 - Sequence motif analysis using Bio.motifs

15 - Cluster Analysis

16 - Supervised learning methods

17 - Graphics including GenomeDiagram

18 - KEGG

19 - Cookbook – Cool things to do with it

20 - The Biopython testing

21 - Advanced

22 - Where to go from here – contributing to Biopython

23 - Appendix, Useful stuff about Python

Credits

References